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Plant Molecular Biology Research
Research Guide

What is Plant Molecular Biology Research?

Plant Molecular Biology Research is the study of molecular mechanisms regulating gene expression, protein function, and cellular processes in plants to understand development, stress responses, and environmental adaptations.

The field encompasses over 114,285 published works focused on topics such as microRNAs, transformation methods, and stress signaling pathways. Key contributions include David P. Bartel's 'MicroRNAs' (2004) with 34,475 citations and Steven J. Clough and Andrew F. Bent's 'Floral dip: a simplified method for Agrobacterium‐mediated transformation of Arabidopsis thaliana' (1998) with 21,916 citations. These papers establish foundational techniques and regulatory networks used across plant research.

114.3K
Papers
N/A
5yr Growth
3.4M
Total Citations

Research Sub-Topics

Why It Matters

Plant Molecular Biology Research enables crop improvement through genetic transformation and stress tolerance mechanisms. Clough and Bent (1998) developed the floral dip method, which simplifies Agrobacterium-mediated transformation of Arabidopsis thaliana without tissue culture, accelerating genetic studies and breeding in model plants. Munns and Tester (2008) detailed salinity tolerance mechanisms, including osmotic and ionic phases, informing breeding programs for salt-stressed crops. Recent advances include Cambridge researchers receiving £7.5 million to build programmable plants and £9.1 million for synthetic biology in plant genomics, demonstrating direct applications in agriculture and biotechnology.

Reading Guide

Where to Start

'Floral dip: a simplified method for Agrobacterium‐mediated transformation of Arabidopsis thaliana' by Clough and Bent (1998) is the first read because it provides a practical, high-impact protocol (21,916 citations) for genetic transformation essential for experimental work in the field.

Key Papers Explained

Bartel (2004) 'MicroRNAs' establishes core regulatory mechanisms (34,475 citations), extended by Lewis et al. (2005) 'Conserved Seed Pairing...' identifying targets (11,810 citations) and Lim et al. (2005) 'Microarray analysis shows...' quantifying downregulation (4,750 citations). Clough and Bent (1998) 'Floral dip...' (21,916 citations) supplies transformation tools, while Munns and Tester (2008) 'Mechanisms of Salinity Tolerance' (12,892 citations) and Zhu (2002) 'SALT AND DROUGHT STRESS SIGNAL TRANSDUCTION IN PLANTS' (5,777 citations) connect to stress applications. Lescot (2002) PlantCARE (7,867 citations) supports promoter studies across these.

Paper Timeline

100%
graph LR P0["Floral dip: a simplified meth...
1998 · 21.9K cites"] P1["PlantCARE, a database of plant c...
2002 · 7.9K cites"] P2["SALT AND DROUGHT...
2002 · 5.8K cites"] P3["MicroRNAs
2004 · 34.5K cites"] P4["Conserved Seed Pairing, Often Fl...
2005 · 11.8K cites"] P5["Signals from chloroplasts conver...
2007 · 5.7K cites"] P6["Mechanisms of Salinity Tolerance
2008 · 12.9K cites"] P0 --> P1 P1 --> P2 P2 --> P3 P3 --> P4 P4 --> P5 P5 --> P6 style P3 fill:#DC5238,stroke:#c4452e,stroke-width:2px
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Most-cited paper highlighted in red. Papers ordered chronologically.

Advanced Directions

Recent preprints reveal transcription factor-mediated recruitment of RNA polymerase IV for siRNAs, multiplexed profiling of transcriptional regulators, and dCas9-based DNA methylation editing tools in Arabidopsis. News highlights viral RNA-guided editors for transgene-free germline changes and chimeric receptors boosting tomato resistance. Funding includes £7.5 million for programmable plants and £9.1 million for plant genomics.

Papers at a Glance

# Paper Year Venue Citations Open Access
1 MicroRNAs 2004 Cell 34.5K
2 <b>Floral dip: a simplified method for</b><i><b>Agrobacterium<... 1998 The Plant Journal 21.9K
3 Mechanisms of Salinity Tolerance 2008 Annual Review of Plant... 12.9K
4 Conserved Seed Pairing, Often Flanked by Adenosines, Indicates... 2005 Cell 11.8K
5 PlantCARE, a database of plant cis-acting regulatory elements ... 2002 Nucleic Acids Research 7.9K
6 S<scp>ALT AND</scp> D<scp>ROUGHT</scp> S<scp>TRESS</scp> S<scp... 2002 Annual Review of Plant... 5.8K
7 Signals from chloroplasts converge to regulate nuclear gene ex... 2007 PubMed 5.7K
8 Arabidopsis mesophyll protoplasts: a versatile cell system for... 2007 Nature Protocols 5.0K
9 MYB transcription factors in Arabidopsis 2010 Trends in Plant Science 4.9K
10 Microarray analysis shows that some microRNAs downregulate lar... 2005 Nature 4.8K

In the News

Code & Tools

Recent Preprints

Latest Developments

Recent developments in plant molecular biology research include the presentation of the latest advances at the XVIII Meeting of Plant Molecular Biology held in Bilbao from July 1-3, 2026, which focused on sharing the latest scientific progress and fostering collaboration (rbmp2026.com). Additionally, breakthroughs such as multiplexed profiling of transcriptional regulators in plant cells were published in November 2025, providing new insights into gene regulation (nature.com). Other notable advancements include the development of versatile molecular tools for customizable DNA methylation editing in Arabidopsis (December 2025) and innovative genome engineering techniques like transposase-assisted target-site integration (June 2024) (nature.com).

Frequently Asked Questions

What is the floral dip method in plant transformation?

The floral dip method, developed by Clough and Bent (1998), uses Agrobacterium vacuum infiltration to transform Arabidopsis thaliana without tissue culture or regeneration. It involves dipping flower buds into an Agrobacterium suspension, yielding transformed seeds. This approach has 21,916 citations and remains a standard protocol.

How do microRNAs function in plants?

MicroRNAs regulate gene expression post-transcriptionally, as detailed in Bartel (2004) with 34,475 citations. Related works like Lewis et al. (2005) show conserved seed pairing identifies thousands of targets, often flanked by adenosines. Lim et al. (2005) demonstrated some microRNAs downregulate large numbers of target mRNAs via microarray analysis.

What are the mechanisms of salinity tolerance in plants?

Munns and Tester (2008) describe two phases: a rapid osmotic phase inhibiting young leaf growth and a slower ionic phase causing toxicity. Tolerance involves cellular, organ, and whole-plant responses. The review has 12,892 citations and guides stress breeding.

What is PlantCARE used for?

PlantCARE, introduced by Lescot (2002), is a database of plant cis-acting regulatory elements, including enhancers and repressors represented by positional matrices and consensus sequences. It links to EMBL, TRANSFAC, and MEDLINE for promoter analysis. The database has 7,867 citations.

How do chloroplasts signal to the nucleus?

Koussevitzky et al. (2007) showed signals from chloroplasts, involving GUN1, converge to regulate nuclear gene expression essential for photoautotrophy. Three retrograde signals coordinate chloroplast function with nuclear genes. The paper has 5,668 citations.

What role do MYB transcription factors play in Arabidopsis?

Dubos et al. (2010) reviewed MYB transcription factors in Arabidopsis, highlighting their functions in development and stress responses. The work has 4,911 citations in Trends in Plant Science.

Open Research Questions

  • ? How do transcription factors recruit RNA polymerase IV to specific DNA sequences for siRNA production in plants?
  • ? What protein-level encoding defines activity of multiplexed transcriptional regulators in plant cells?
  • ? How can dCas9 fusions to effectors enable customizable DNA methylation editing in Arabidopsis?
  • ? What chimeric pattern recognition receptors enhance resistance in crops like tomato?
  • ? How do viral delivery systems achieve transgene-free germline editing in plants?

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Curated by PapersFlow Research Team · Last updated: February 2026

Academic data sourced from OpenAlex, an open catalog of 474M+ scholarly works · Web insights powered by Exa Search

Editorial summaries on this page were generated with AI assistance and reviewed for accuracy against the source data. Paper metadata, citation counts, and publication statistics come directly from OpenAlex. All cited papers link to their original sources.